python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL242_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL243_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL244_b17_ATAC_SpleenThymus.barcodes_annotated.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L1-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L2-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L3-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-0-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-1-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-2-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-3-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-4-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-5-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-6-9/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-0/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-1/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-2/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-3/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-4/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-5/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-6/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-7/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL245_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL247_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL248_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL249_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL250_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL251_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL252_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > L4-7-8/SL253_b17_RNA_SpleenThymus.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz